Blog topic: Stanford Digital Repository

Co-expression of CDT1A and SOL2 in Arabidopsis thaliana seedling leaf

SDR Deposit of the Week: Video tutorials for 4D visualization

May 15, 2017
by Amy E. Hodge

Many researchers rely on open source software for data analysis, but lack of documentation on how to use the software can sometimes be an issue. In these situations, it's up to someone in the community to step up and create better resources to help people learn how to get the most out of these tools.

Stanford biology undergrad Nathan Cho found himself in just this situation recently while working on his honors thesis. Cho's project involved studying how stem cell development in plants affects the timing of the cell cycle, the process by which cells grow and divide. Analysis of his microscopy images required him to use open source software from the Max Plank Institute called MorphoGraphX.

Johan de Witt

A better home for your scholarly work: the Stanford Digital Repository

April 25, 2017
by Amy E. Hodge

What do you do when a Google search for an article title only returns one dead link and two advertisements? And yet you have this article in front of you so you know it exists? If you want to cite that article in a research paper but you don't have all the publication information to create the citation, you do the obvious thing.

You contact a librarian.

A student at Berkeley recently contacted Stanford Libraries, hoping that we could provide her with citation information for an article about Johan de Witt (the dashing gentleman in the image above) that she knew had come out of Stanford. The URL where she had accessed the article was at web.stanford.edu, but, sadly, this link no longer worked. She hoped someone at the library could help her identify the publisher of this article.

Revs Dynamic Design Lab Video Still

SDR Deposit of the Week : Sensors, video, and a 1965 Ferrari

November 21, 2016
by Peter Alexander Mangiafico

It should come as little surprise that Stanford is playing a large role in the rapid progress towards fully autonomous vehicles. Research data and video recorded by John Kegelman, Lene Harbott, Chris Gerdes and others in the Dynamic Design Lab are now deposited and streamable from the SDR. These data are useful in a variety of ways, such as to inform self-driving cars that can respond to changing conditions like an expert driver handling a race car on a track.

Microscopy image by Juan G. Cueva and Miriam B. Goodman

SDR Deposit of the Week: Data on Exhibit

For nearly four years, the Stanford Digital Repository (SDR) has been home to the research outputs of scientists and scholars from across Stanford’s campus. But while those data files, videos, source code, microscopy images, survey results, maps and more have been discoverable and accessible through the Libraries’ online catalog, SearchWorks, it has been hard to get an overview of all the available data. Until now.

Logo of the International Image Interoperability Framework

Stanford Libraries introduces new features in SearchWorks to support enhanced access to image collections

The Stanford University Libraries (SUL) has introduced new features in its online catalog, SearchWorks, and the Stanford Digital Repository to make it easier for users worldwide to get access to a treasure trove of high resolution digital images.  The basis of these new features is the International Image Interoperability Framework, a global initiative co-founded by SUL to support the creation of a global network of broadly accessible images curated and produced by libraries, museums, archives and galleries to support research, teaching and broad public use.  

Screenshot of Claudia's Data Visualization

Visualizing History in Rio de Janeiro

The 2016 Summer Olympics are drawing lots of attention to Rio de Janeiro. But while most people are focused on the current games -- as well as current events, politics, and health issues that might impact the games -- others have been spending their time delving into the history of this more than 450 year-old city. And Stanford Libraries' own Claudia Engel couldn't resist dipping her hand in either.

Using R with the Stanford Digital Repository

In honor of the useR! 2016 Conference taking place this week, we wanted to outline ways researchers can use the Stanford Digital Repository to power their R visualizations.

The Stanford Digital Repository allow Stanford researchers and affiliates to deposit research data for preservation, access, and discovery. Data deposited in the repository is citable and from which the original content can be downloaded. The data is then made available through open web standard services for consumption. For example, images in the repository are delivered by a IIIF-compatible service, geospatial data are served out as Web Mapping Services (WMS) and Web Feature Services (WFS), and generic files are all served through HTTP.

R users can take advantage of these web services and the data being served out.

Pages

RSS