We have a campus-wide license agreement for PyMOL and AxPyMOL. As a subscribing organization, we have access to the latest version of the software, including beta versions, as well as official documentation for using it. The license agreement is valid through 12/31/2021.
Access to the license keys are limited to current students, faculty, and staff at Stanford. The license key for PyMOL 2 is located on the Download PyMOL 2 page. To get the license key for AxPyMOL, please send a request to Grace Baysinger (graceb[at]stanford.edu), Aparna Sharma (aparna.sharma[at]stanford.edu), or Cristina Flores-Herrera (cfloresh[at]stanford.edu) using your @Stanford email address. Please also include your Stanford ID number in the request.
PyMOL 2 — molecular visualization system (PC, Mac, Linux). Please note: you must be on-campus or connected via VPN.
- Download PyMOL 2 (Stanford only)
- Download PyMOL 2 license file (Stanford only)
- PyMOL 2 FAQs
- PyMOLWiki [Current news, tutorials, plugins, scripts]
- About PyMOL 2
- PyMOL on the iPad (free)
AxPyMOL - plugin for Windows PowerPoint that enables presentation of 3-D molecular data without having to "tab out" of PowerPoint slides. Please contact Grace Baysinger,
- PyMOL Documentation (access limited to subscribers, registration required, request access from Grace Baysinger (graceb[at]stanford.edu), Aparna Sharma (aparna.sharma[at]stanford.edu), or Cristina Flores-Herrera (cfloresh[at]stanford.edu) using your @Stanford email address.